Thesis Details

Vizualizace značených buněk modelového organismu

Master's Thesis Student: Kubíček Radek Academic Year: 2006/2007 Supervisor: Herout Adam, prof. Ing., Ph.D.
English title
Visualization of Marked Cells of a Model Organism
Language
Czech
Abstract

This master thesis is focused on volumetric data rendering and on highlighting and visualization of the selected cells of the model organisms. These data are captured by a confocal deconvolution microscope. Input data form one large volumetric block containing separate slices. This data block is rendered by an applicable method and then are identified and visualized the cells marked by the GFP (Green Fluorescent Protein) process or by chlorophyle fluorescency.

The principal aim of this work is to find out the preferably optimal effective method enabling this highlighting, most preferably working without a manual check. Due to the data structure, this ambition seems hardly realizable, so it suffices to find out a manual working method. The last step is to embed the results of this work into FluorCam application, the confocal deconvolution microscope data visualizer.

Keywords

volumetric data, volumetric data rendering, 3D textures, biological data rendering, GFP, Green Fluorescent Protein, Caenorhabditis elegans, FluorCam, GPU acceleration, shader

Department
Department of Computer Graphics and Multimedia FIT BUT
Degree Programme
Information Technology, Field of Study Computer Graphics and Multimedia
Files
Status
defended, grade A
Date
21 June 2007
Reviewer
Kršek Přemysl, doc. Ing., Ph.D.
Committee
Zemčík Pavel, prof. Dr. Ing. (DCGM FIT BUT), předseda
Fučík Otto, doc. Dr. Ing. (DCSY FIT BUT), člen
Křena Bohuslav, Ing., Ph.D. (DITS FIT BUT), člen
Racek Stanislav, doc. Ing., CSc. (WBU in Pilsen), člen
Smrž Pavel, doc. RNDr., Ph.D. (DCGM FIT BUT), člen
Vojnar Tomáš, prof. Ing., Ph.D. (DITS FIT BUT), člen
Citation
KUBÍČEK, Radek. Vizualizace značených buněk modelového organismu. Brno, 2007. Master's Thesis. Brno University of Technology, Faculty of Information Technology. 2007-06-21. Supervised by Herout Adam. Available from: https://www.fit.vut.cz/study/thesis/2672/
BibTeX 
@mastersthesis{FITMT2672,
    author = "Radek Kub\'{i}\v{c}ek",
    type = "Master's thesis",
    title = "Vizualizace zna\v{c}en\'{y}ch bun\v{e}k modelov\'{e}ho organismu",
    school = "Brno University of Technology, Faculty of Information Technology",
    year = 2007,
    location = "Brno, CZ",
    language = "czech",
    url = "https://www.fit.vut.cz/study/thesis/2672/"
}

Theses

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