Publications
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2024
VELECKÝ, J.; BEREZNÝ, M.; MUSIL, M.; MAZURENKO, S.; BEDNÁŘ, D.; DAMBORSKÝ, J. BenchStab: A tool for automated querying of web-based stability predictors. BIOINFORMATICS, 2024, vol. 40, no. 9,
p. 1-8. ISSN: 1367-4803. Detail -
2023
MUSIL, M.; JEŽÍK, A.; BORKO, S.; DAMBORSKÝ, J.; BEDNÁŘ, D. FireProt 2.0: Web-based Platform for the Fully-Automated Design of Thermostable Proteins. Lyon: 2023. Detail
MUSIL, M.; JEŽÍK, A.; HORÁČKOVÁ, J.; BORKO, S.; KABOUREK, P.; DAMBORSKÝ, J.; BEDNÁŘ, D. FireProt 2.0: Web-based Platform for the Fully-Automated Design of Thermostable Proteins. BRIEFINGS IN BIOINFORMATICS, 2023, vol. 25, no. 1,
p. 1-10. ISSN: 1467-5463. DetailPOLJOVKA, A.; MUSIL, M.; BEDNÁŘ, D.; CHOVANOVÁ, K.; BAUEROVÁ-HLINKOVÁ, V.; BELLOVÁ, J.; KOHÚTOVÁ, L.; BARÁTH, P.; ZÁMOCKÝ, M. Comparison of Fungal Thermophilic and Mesophilic Catalase-Peroxidases for Their Antioxidative Properties. Antioxidants, 2023, vol. 12, no. 7,
p. 1-19. ISSN: 2076-3921. Detail -
2022
VELECKÝ, J.; HAMŠÍKOVÁ, M.; ŠTOURAČ, J.; MUSIL, M.; DAMBORSKÝ, J.; BEDNÁŘ, D.; MAZURENKO, S. SoluProtMutDB: A manually curated database of protein solubility changes upon mutations. Computational and Structural Biotechnology Journal, 2022, vol. 20, no. 1,
p. 6339-6347. ISSN: 2001-0370. Detail -
2021
KHAN, R.; MUSIL, M.; ŠTOURAČ, J.; DAMBORSKÝ, J.; BEDNÁŘ, D. Fully Automated Ancestral Sequence Reconstruction using FireProtASR. Current Protocols in Bioinformatics, 2021, vol. 1, no. 2,
p. 1-5. ISSN: 1934-3396. Detail -
2018
BEERENS, K.; MAZURENKO, S.; KUNKA, A.; MARQUES, S.; HANSEN, N.; MUSIL, M.; CHALOUPKOVÁ, R.; WATERMAN, J.; BREZOVSKÝ, J.; BEDNÁŘ, D.; PROKOP, Z.; DAMBORSKÝ, J. Evolutionary Analysis As a Powerful Complement to Energy Calculations for Protein Stabilization. ACS Catalysis, 2018, vol. 2018, no. 8,
p. 9420-9428. ISSN: 2155-5435. DetailMUSIL, M.; MARTÍNEK, T.; ZENDULKA, J. FireProt: web server for automated design of thermostable proteins. DAZ & WIKT 2018 Proceedings. Brno: 2018.
p. 1-4. Detail -
2017
MUSIL, M.; ŠTOURAČ, J.; BENDL, J.; BREZOVSKÝ, J.; PROKOP, Z.; ZENDULKA, J.; MARTÍNEK, T.; BEDNÁŘ, D.; DAMBORSKÝ, J. FireProt: web server for automated design of thermostable proteins. Nucleic Acids Research, 2017, vol. 45, no. 1,
p. 393-399. ISSN: 1362-4962. Detail -
2016
BENDL, J.; MUSIL, M.; ŠTOURAČ, J.; ZENDULKA, J.; DAMBORSKÝ, J.; BREZOVSKÝ, J. PredictSNP2: A Unified Platform for Accurately Evaluating SNP Effects by Exploiting the Different Characteristics of Variants in Distinct Genomic Regions. PLoS Computational Biology, 2016, vol. 12, no. 5,
p. 1-18. ISSN: 1553-7358. DetailBENDL, J.; ŠTOURAČ, J.; ŠEBESTOVÁ, E.; VÁVRA, O.; MUSIL, M.; BREZOVSKÝ, J.; DAMBORSKÝ, J. HotSpot Wizard 2.0: Web Server for Automated Design of Mutations and Smart Libraries. Nucleic Acids Research, 2016, vol. 44, no. 1,
p. 479-487. ISSN: 1362-4962. Detail