Product Details
pqsfinder: an R/Bioconductor package for identification of potential quadruplex forming sequences
Created: 2016
Czech title
pqsfinder: R/Bioconductor balíček pro identifikaci sekvencí tvořících kvadruplexy
Type
software
License
Use of the result by another entity is possible without acquiring a license in some cases
License Fee
The licensor does not require a license fee for the result
Authors
Hon Jiří, Ing., Ph.D.
Lexa Matej, Ing., Ph.D. (DFIT-Dean)
Martínek Tomáš, doc. Ing., Ph.D. (DCSY)
Zendulka Jaroslav, doc. Ing., CSc. (UIFS)
Lexa Matej, Ing., Ph.D. (DFIT-Dean)
Martínek Tomáš, doc. Ing., Ph.D. (DCSY)
Zendulka Jaroslav, doc. Ing., CSc. (UIFS)
Keywords
G-quadruplex; quadruplex; DNA; R; Bioconductor; pattern matching; searching; annotation
Description
The main functionality of the this package is to detect DNA sequence patterns that are likely to fold into an intramolecular G-quadruplex (G4). Unlike many other approaches, this package is able to detect sequences responsible for G4s folded from imperfect G-runs containing bulges or mismatches and as such is more sensitive than competing algorithms.
Location
License Conditions
Free software under the terms of BSD license (see http://www.opensource.org/licenses/bsd-license.php).
Projects
Výzkum pokročilých metod ICT a jejich aplikace, BUT, Vnitřní projekty VUT, FIT-S-14-2299, start: 2014-01-01, end: 2016-12-31, completed
Departments