Result Details

Integration System for Functional Annotation of Single Nucleotide Polymorphism

BENDL, J. Integration System for Functional Annotation of Single Nucleotide Polymorphism. Proceedings of the 18th Conference STUDENT EEICT 2012 Volume 3. Brno: Faculty of Information Technology BUT, 2012. p. 340-344. ISBN: 978-80-214-4462-1.
Type
conference paper
Language
English
Authors
Bendl Jaroslav, Ing., Ph.D., DIFS (FIT)
Abstract

This paper describes a new integrative system for ranking non-synonymous protein substitutions by their deleterious effects. The computational core of the proposed system is based on a sophisticated combination of results from the selected subset of existing tools. The weight coefficients for individual tools are calculated on the basis of their confidence score and the tool reliability which are assigned accordingly to the tool performance measured on the extensive dataset. The performance validation on the dataset consisting of 5000 substitutions shows that overall accuracy of the system was improved by 8% in comparison to the best of the integrated methods.

Keywords

SNP, nsSNP, pathogenicity prediction, protein substitutions

Published
2012
Pages
340–344
Proceedings
Proceedings of the 18th Conference STUDENT EEICT 2012 Volume 3
Conference
Student EEICT 2012
ISBN
978-80-214-4462-1
Publisher
Faculty of Information Technology BUT
Place
Brno
BibTeX 
@inproceedings{BUT192805,
  author="Jaroslav {Bendl}",
  title="Integration System for Functional Annotation of Single Nucleotide Polymorphism",
  booktitle="Proceedings of the 18th Conference STUDENT EEICT 2012 Volume 3",
  year="2012",
  pages="340--344",
  publisher="Faculty of Information Technology BUT",
  address="Brno",
  isbn="978-80-214-4462-1",
  url="https://www.fit.vut.cz/research/publication/9928/"
}
Files
Projects
Advanced recognition and presentation of multimedia data, BUT, Vnitřní projekty VUT, FIT-S-11-2, start: 2011-01-01, end: 2013-12-31, completed
Centrum excelence IT4Innovations, MŠMT, Operační program Výzkum a vývoj pro inovace, ED1.1.00/02.0070, start: 2011-01-01, end: 2015-12-31, completed
Security-Oriented Research in Information Technology, MŠMT, Institucionální prostředky SR ČR (např. VZ, VC), MSM0021630528, start: 2007-01-01, end: 2013-12-31, running
Research groups
Information and Database Systems Research Group (RG IS)
Departments
Department of Information Systems (DIFS)
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