Course details

Bio-Inspired Computers

BIN Acad. year 2023/2024 Summer semester 5 credits

This course introduces computational models and computers which have appeared at the intersection of hardware and artificial intelligence in the recent years as an attempt to solve computational and energy inefficiency of conventional computers. The course surveys relevant theoretical models, reconfigurable architectures and computational intelligence techniques inspired at the levels of phylogeny, ontogeny and epigenesis. In particular, the following topics will be discussed: emergence and self-organization, evolutionary design, evolvable hardware, cellular systems, neural hardware, molecular computers and nanotechnology. Typical applications will illustrate the mentioned approaches.


Course coordinator

Language of instruction



Examination (written)

Time span

  • 26 hrs lectures
  • 8 hrs pc labs
  • 18 hrs projects

Assessment points

  • 52 pts final exam (written part)
  • 15 pts mid-term test (written part)
  • 8 pts labs
  • 25 pts projects




Learning objectives

To understand the principles of bio-inspired computational systems. To be able to use the bio-inspired techniques in the design, implementation and operational phases of a computational system.
Students will be able to utilize evolutionary algorithms to design computational structures and electronic circuits. They will be able to model, simulate and implement non-conventional, in particular bio-inspired, computational systems.
Understanding the relation between computers (computing) and some natural processes.

Why is the course taught

Many phenomena observed in nature (such as evolution, self-organization and learning) can be understood as computational processes. Inspired in these phenomena, you will learn how to design algorithms and computers showing properties (such as adaptation, self-organization, energy efficiency) that are hard to achieve by means of conventional techniques developed in computer science and engineering.

Study literature

  • Kvasnička, V., Pospíchal J., Tiňo P.: Evolučné algoritmy. Vydavatelství STU Bratislava, 2000, 215 s., ISBN 80-227-1377-5
  • Mařík et al.: Umělá inteligence IV, Academia, 2003, 480 s., ISBN 80-200-1044-0

Fundamental literature

  • Sekanina L., Vašíček Z., Růžička R., Bidlo M., Jaroš J., Švenda P.: Evoluční hardware: Od automatického generování patentovatelných invencí k sebemodifikujícím se strojům. Academia Praha 2009, ISBN 978-80-200-1729-1
  • Floreano D., Mattiussi C.: Bioinspired Artificial Intelligence: Theories, Methods, and Technologies. The MIT Press, Cambridge 2008, ISBN 978-0-262-06271-8
  • Trefzer M., Tyrrell A.M.: Evolvable Hardware - From Practice to Application. Berlin: Springer Verlag, 2015, ISBN 978-3-662-44615-7
  • Miller J.F.: Cartesian Genetic Programming, Springer Verlag, 2011, ISBN 978-3-642-17309-7
  • Sze V., Chen Y.H., Yang T.J., Emer J.S.: Efficient Processing of Deep Neural Networks. Morgan & Claypool Publishers, 2020, ISBN 978-1681738352
  • Rozenberg G., Bäck T., Kok J.N.: Handbook of Natural Computing, Springer 2012, 2052 p., ISBN 978-3540929093
  • Banzhaf, W., Machado, P., Zhang, M.: Handbook of Evolutionary Machine Learning, Springer Singapore, 2023, 978-981-99-3813-1

Syllabus of lectures

  1. Introduction, inspiration in biology, entropy and self-organization
  2. Limits of abstract and physical computing
  3. Evolutionary design
  4. Cartesian genetic programming
  5. Reconfigurable computing devices
  6. Evolutionary design of electronic circuits
  7. Evolvable hardware, applications
  8. Computational development
  9. Neural networks and neuroevolution
  10. Neural hardware
  11. DNA computing
  12. Nanotechnology and molecular electronics
  13. Recent trends

Syllabus of computer exercises

  1. Evolutionary design of combinational circuits
  2. Statistical evaluation of experiments with evolutionary design
  3. Celulární automaty
  4. Neuropočítače

Syllabus - others, projects and individual work of students

Every student will choose one project from a list of approved projects that are relevant for this course. The implementation, presentation and documentation of the project will be evaluated. 

Progress assessment

Mid-term exam, project and its presentation, computer lab assignments. 
Mid-term exam, realization and presentation of the project, computer lab assignments in due dates. The minimal number of points which can be obtained from the final exam is 20. Otherwise, no points will be assigned to a student. In the case of a reported barrier preventing the student to defend the project or solve a lab assignment, the student will be allowed to defend the project or solve the lab assignment on an alternative date.

Exam prerequisites



Mon other 2024-05-13 L314 09:0010:00 BIN obhajoba (Mrázek, Hurta, Sekanina)
Mon other 2024-05-06 L314 10:0011:00 BIN obhajoba (Mrázek, Hurta)
Mon other 2024-05-13 L314 10:0011:00 BIN obhajoba (Mrázek, Hurta, Sekanina)
Mon other 2024-05-13 L314 13:0014:00 BIN obhajoba (Mrázek, Hurta)
Tue other 2024-05-07 L304 12:0013:00 BIN obhajoba (Mrázek, Hurta, Klhůfek)
Tue other 2024-05-14 L314 12:0013:00 BIN obhajoba (Mrázek, Sekanina, Malik, Klhůfek)
Tue other 2024-05-07 L304 13:0014:00 BIN obhajoba (Mrázek, Hurta, Klhůfek, Malik)
Tue other 2024-05-14 L314 13:0014:00 BIN obhajoba (Mrázek, Sekanina, Malik, Klhůfek)
Tue exam 2024-05-28 A112 15:0016:50 2. termín
Wed exam 2024-03-27 A112 D0207 08:0008:50 Půlsemestrální zkouška
Wed lecture 1., 8., 9. of lectures D0207 08:0009:5090 1MIT 2MIT NBIO NMAL xx Bidlo
Wed lecture 2., 3., 4., 5., 6., 7., 10., 11., 12. of lectures D0207 08:0009:5090 1MIT 2MIT NBIO NMAL xx Sekanina
Wed other 2024-05-15 L314 09:0010:00 BIN obhajoba (Mrázek, Hurta, Klhůfek)
Wed other 2024-05-15 L314 10:0011:00 BIN obhajoba (Mrázek, Hurta, Klhůfek)
Wed exam 2024-06-05 E104 11:0012:50 3. termín
Thu comp.lab 7., 9., 11. of lectures N105 14:0015:5020 1MIT 2MIT xx Mrázek
Thu comp.lab 2024-03-14 N105 14:0015:5020 1MIT 2MIT xx Vašíček
Thu exam 2024-05-16 E112 15:0016:50 1. termín
Thu comp.lab 7., 9., 11. of lectures N105 16:0017:5020 1MIT 2MIT xx Mrázek
Thu comp.lab 2024-03-14 N105 16:0017:5020 1MIT 2MIT xx Vašíček
Fri comp.lab 7., 9., 11. of lectures N105 11:0012:5020 1MIT 2MIT xx Mrázek
Fri comp.lab 2024-03-15 N105 11:0012:5020 1MIT 2MIT xx Vašíček

Course inclusion in study plans

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