Supercomputing Technologies Research Group SC@FIT
Supercomputing Technologies Research Group SC@FIT
The Supercomputing Technologies group focuses on the architecture and implementation of high performance computing systems, their operation and energy efficiency. The group specialises in the design and development of highly optimised algorithms, communication overhead reduction and scalability. The group's principal application is the k-Wave toolbox for tissue realistic simulation of ultrasound wave propagation.
- Architecture of parallel systems
- Performance and scaling models of parallel systems
- HPC systems based on GPUs and other accelerators
- Low power systems, power-performance optimization
- Domain decomposition for spectral methods
- Automatic load balancing on heterogeneous systems
- Multi-scale and multi-physics model coupling
- Asynchronous input/output in HPC applications
- System for managing and monitoring supercomputers
- Modern programming languages in HPC (Python, OpenACC, Thrust)
- Simulation of ultrasound propagation in human body
- Acceleration of photoacoustic imaging
- Design of ultrasound sensors
- High performance scientific applications
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Current research themes
The research group currently works on the PAMMOTH project on the photoacoustic breast screening. The group is involved in the data collection, on-the fly data quality assessment, and the offline processing on the supercomputer. The image reconstruction is done using our massively parallel implementation of the k-Wave toolbox based on the local decomposition of spectral methods. The full processing automation and monitoring is ensured by the in-house tool k-Dispatch
The group also participates in the project focusing on neurostimulation and neurosurgery. Here, we have been developing the elastic wave simulator accounting for both compression, and shear waves and a novel numeric method for solving problems with jump discontinuities.
- Prof Hlavička Award for the best presentation at PhD conference PAD 2019 - Filip Vaverka
- Excellent Poster Presentation Award - Signal Frequency Content and Appearance of Tumors in Photoacoustic Breast Tomography: A Simulation by Maura Dantuma, Felix Lucka, Bradley Treeby, Jiri Jaros, Ben Cox, and Srirang Manohar - Ultrasonics 2018, Caparica, Portugal.
- Research Poster Award - GPU-accelerated Simulation of Elastic Wave Propagation by Kristian Kadlubiak, Jiří Jaroš, and Bradley Treeby - HPC applications, ISC 2018, Frankfurt, Germany.
- PRACE HPC Ambassador Award, Marta Čudová, Summer Of HPC, 2016.
- Best paper award, BREITENBACHER Dominik, HOMOLIAK Ivan, JAROŠ Jiří and HANÁČEK Petr. Impact of Optimization and Parallelism on Factorization Speed of SIQS. In: Proceedings of The 20th World Multi-Conference on Systemics, Cybernetics and Informatics. Orlando: The International Institute of Informatics and Systemics, 2016, pp. 55-62. ISBN 978-1-941763-41-4.
- k-Wave toolbox - 12 047 downloads
- Modeling nonlinear ultrasound propagation in heterogeneous media with power law absorption using a k-space pseudospectral method - Journal paper, JASA (110 citations)
- Parallel Genetic Algorithm on the CUDA Architecture - Conference paper, EvoStar (50 citations)
- Parallel Genetic Algorithm Solving 0/1 Knapsack Problem Running on the GPU - Conference paper, Mendel (15 citations)
- Supercomputing - every year attendance at the best conference in the field, poster 2017, poster 2018
- ISC HPC - every year attendance at the best European conference in the field, poster 2018
PRACE Summer of HPC
- Filip Kukliš , SURFsara, Amsterdam, NL, 2018
- Petr Stehlík , CINECA, Bologna, It, 2017
- Marta Čudová , EPCC, Edinburgh, UK, 2016
- Ondřej Vysocký , EPCC, Edinburgh, UK, 2015
- Vojtech Nikl, CINECA, Bologna, It, 2014
The SC@FIT research group offers collaboration in the design and development of applications demanding high compute power, large operational memory and big data. We have deep experience in the R@D of scientific codes for shared memory systems (high-end servers), distributed systems (clusters) and hybrid systems with processors and graphics processing units.
The group also offers the application of the k-Wave toolbox for the nonlinear simulation of ultrasound wave propagation in medical and industrial problems.
- Biomedical Ultrasound Group, University College London, UK - development of the simulation toolbox k-Wave for modelling ultrasound propagation in human body
- Institute of Biomedical Engineering, Ludwig Cancer Research, University of Oxford, UK - Kidney cancer treatment planning
- Turku High-Intensity Focused Ultrasound (HIFU) Research Centre, Turku, Finland - Ultrasound Prostate cancer treatment
- IT4Innovations národní superpočítačové centrum, VŠB - Technical University Ostrava, CZ - Research and development on the Anselm and Salomon supercomputer, collaboration in the READEX project
- The University of Twente, Twente, NL - acceleration of the photoacoustic imaging of breast (PAMMTOH project)
- University of Bern, Bern, CH - acceleration of the photoacoustic imaging of breast (PAMMTOH project)
- Medisch Spectrum Twente, Twente, NL - acceleration of the photoacoustic imaging of breast (PAMMTOH project)
- Imasonic SAS, Voray sur l'Ognon, FR -acceleration of the photoacoustic imaging of breast (PAMMTOH project)
- EKSPLA, Vilnius, Lt - acceleration of the photoacoustic imaging of breast (PAMMTOH project)
- Continental, Ostrava - Research and development of ultrasound sensors
- Faculty of Civil Engineering, Brno University of Technology, CZ - Simulation of fraction tests in quasi-brittle materials
Brno University of Technology
Faculty of Information Technology
Department of Computer Systems
Bozetechova 2, Room L334
612 66 Brno, Czech Republic
Phone: +420 54114-1207