Result Details

Constructing Phylogenetic Trees Based on Intra-Group Analysis of Human Mitochondrial DNA

VOGEL, I.; ZEDEK, F.; OČENÁŠEK, P. Constructing Phylogenetic Trees Based on Intra-Group Analysis of Human Mitochondrial DNA. In Human Interface and the Management of Information. Interacting with Information. Lecture Notes in Computer Science. Lecture Notes in Computer Science. Berlin Heidelberg: Springer Verlag, 2011. no. 1, p. 165-169. ISBN: 978-3-642-21792-0. ISSN: 0302-9743.
Type
conference paper
Language
English
Authors
Vogel Ivan, Ing., Ph.D.
Zedek František
Očenášek Pavel, Mgr. Ing., Ph.D., DIFS (FIT)
Abstract

This paper describes a modified algorithm for inferring phylogenetictrees based on distance techniques. The input of the algorithmconsists of predefined clusters of data. It uses a usual agglomerative approach,however it involves a novel technique for distance matrix creationas the task of clustering predefined groups of human mitochondrial DNAsequences should be fulfilled.

Keywords

intra-group analysis, substitution model, position-specific
clustering vector, mtDNA, population divergence, phylogenetic tree,
neighbor joining

Published
2011
Pages
165–169
Journal
Lecture Notes in Computer Science, vol. 6771, no. 1, ISSN 0302-9743
Proceedings
Human Interface and the Management of Information. Interacting with Information
Series
Lecture Notes in Computer Science
Conference
HCII 2011
ISBN
978-3-642-21792-0
Publisher
Springer Verlag
Place
Berlin Heidelberg
DOI
10.1007/978-3-642-21793-7_20
EID Scopus
2-s2.0-79960338966
BibTeX 
@inproceedings{BUT76261,
  author="Ivan {Vogel} and František {Zedek} and Pavel {Očenášek}",
  title="Constructing Phylogenetic Trees Based on Intra-Group Analysis of Human Mitochondrial DNA",
  booktitle="Human Interface and the Management of Information. Interacting with Information",
  year="2011",
  series="Lecture Notes in Computer Science",
  journal="Lecture Notes in Computer Science",
  volume="6771",
  number="1",
  pages="165--169",
  publisher="Springer Verlag",
  address="Berlin Heidelberg",
  doi="10.1007/978-3-642-21793-7\{_}20",
  isbn="978-3-642-21792-0",
  issn="0302-9743"
}
Projects
Advanced recognition and presentation of multimedia data, BUT, Vnitřní projekty VUT, FIT-S-11-2, start: 2011-01-01, end: 2013-12-31, completed
Advanced secured, reliable and adaptive IT, BUT, Vnitřní projekty VUT, FIT-S-11-1, start: 2011-01-01, end: 2013-12-31, completed
Security-Oriented Research in Information Technology, MŠMT, Institucionální prostředky SR ČR (např. VZ, VC), MSM0021630528, start: 2007-01-01, end: 2013-12-31, running
Research groups
NES@FIT - Networks and distributed systems research group (RG NES@FIT)
Departments
Department of Information Systems (DIFS)
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