Detail výsledku

A perspective on genetic and polygenic risk scores-advances and limitations and overview of associated tools

SCHWARZEROVÁ, J.; HURTA, M.; BARTOŇ, V.; LEXA, M.; WALTHER, D.; PROVAZNÍK, V.; WECKWERTH, W. A perspective on genetic and polygenic risk scores-advances and limitations and overview of associated tools. BRIEFINGS IN BIOINFORMATICS, 2024, vol. 25, no. 3, p. 1-11. ISSN: 1477-4054.
Typ
článek v časopise
Jazyk
anglicky
Autoři
Schwarzerová Jana, Ing. et Ing., MSc, UBMI (FEKT)
Hurta Martin, Ing., UPSY (FIT)
Bartoň Vojtěch, Ing.
Lexa Matej, Ing., Ph.D., UPSY (FIT)
Walther Dirk
Provazník Valentýna, prof. Ing., Ph.D., UBMI (FEKT)
Weckwerth Wolfram, Prof., Dr. rer. nat.
Abstrakt

Polygenetic Risk Scores are used to evaluate an individual's vulnerability to developing specific diseases or conditions based on their genetic composition, by taking into account numerous genetic variations. This article provides an overview of the concept of Polygenic Risk Scores (PRS). We elucidate the historical advancements of PRS, their advantages and shortcomings in comparison with other predictive methods, and discuss their conceptual limitations in light of the complexity of biological systems. Furthermore, we provide a survey of published tools for computing PRS and associated resources. The various tools and software packages are categorized based on their technical utility for users or prospective developers. Understanding the array of available tools and their limitations is crucial for accurately assessing and predicting disease risks, facilitating early interventions, and guiding personalized healthcare decisions. Additionally, we also identify potential new avenues for future bioinformatic analyzes and advancements related to PRS.

Klíčová slova

polygenic risk score, genetic variations, GWAS, genomic prediction, genotype, phenotype

URL
Rok
2024
Strany
1–11
Časopis
BRIEFINGS IN BIOINFORMATICS, roč. 25, č. 3, ISSN 1477-4054
Vydavatel
Oxford University Press
DOI
UT WoS
001273456200003
EID Scopus
BibTeX
@article{BUT188670,
  author="Jana {Schwarzerová} and Martin {Hurta} and Vojtěch {Bartoň} and Matej {Lexa} and Dirk {Walther} and Valentýna {Provazník} and Wolfram {Weckwerth}",
  title="A perspective on genetic and polygenic risk scores-advances and limitations and overview of associated tools",
  journal="BRIEFINGS IN BIOINFORMATICS",
  year="2024",
  volume="25",
  number="3",
  pages="1--11",
  doi="10.1093/bib/bbae240",
  issn="1467-5463",
  url="https://academic.oup.com/bib/article/25/3/bbae240/7676477"
}
Soubory
Projekty
PGine: Py/Bioconda software package for calculation of polygenic risk score in plants, VUT, Vnitřní projekty VUT, FEKT/FIT-J-23-8274, zahájení: 2023-03-01, ukončení: 2024-02-28, řešení
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